Transcript: lnc-TSPAN1-1:2

Basic information

LNCipedia transcript ID: lnc-TSPAN1-1:2 
LNCipedia gene ID: lnc-TSPAN1-1
Ensembl Gene ID: ENSG00000227857
Ensembl Transcript ID: ENST00000452785
Location (hg38): chr1:46134531-46139081
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 339 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139867; ENST00000452785.2
Alternative gene names: ENSG00000227857.2; RP4-533D7.5; AL358075.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.973 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPAN1-1:2
4.0 lnc-TSPAN1-1:2
4.1 lnc-TSPAN1-1:2
5.0 lnc-TSPAN1-1:2
5.1 lnc-LURAP1-2:7
5.2 lnc-TSPAN1-1:2