Transcript: lnc-TSPAN1-1:4

Basic information

LNCipedia transcript ID: lnc-TSPAN1-1:4 
LNCipedia gene ID: lnc-TSPAN1-1
Location (hg38): chr1:46133168-46133392
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 225 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000118146.1|FTMT20400001770.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TSPAN1-1:4
5.0 lnc-TSPAN1-1:4
5.1 lnc-LURAP1-2:1
5.2 lnc-TSPAN1-1:4