Transcript: lnc-TSPAN11-3:1

Basic information

LNCipedia transcript ID: lnc-TSPAN11-3:1 
LNCipedia gene ID: lnc-TSPAN11-3
Ensembl Gene ID: ENSG00000246331
Ensembl Transcript ID: ENST00000500076
RefSeq ID: NR_135046
Location (hg38): chr12:30755074-30780739
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1552 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500076; ENST00000500076.2; RP11-77I22.2-001; OTTHUMT00000403385.1; NONHSAT027513; NR_135046.1
Alternative gene names: ENSG00000246331; RP11-77I22.2; ENSG00000246331.2; OTTHUMG00000169308.1; AC010198.1; LOC645485


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.255 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN11-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN11-3:1
3.1 lnc-TSPAN11-3:1
4.0 lnc-TSPAN11-3:1
4.1 lnc-TSPAN11-3:1
5.0 lnc-TSPAN11-3:1
5.1 lnc-KIAA1551-33:2
5.2 lnc-TSPAN11-3:1