Transcript: lnc-TSPAN12-3:1

Basic information

LNCipedia transcript ID: lnc-TSPAN12-3:1 
LNCipedia gene ID: lnc-TSPAN12-3
Ensembl Gene ID: ENSG00000233417
Ensembl Transcript ID: ENST00000456062
Location (hg38): chr7:120141016-120142996
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456062; ENST00000456062.1; RP4-742N3.1-001; OTTHUMT00000346763.1; NONHSAT122989
Alternative gene names: ENSG00000233417; RP4-742N3.1; ENSG00000233417.1; OTTHUMG00000156953.1; AC004872.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.4235 non-coding 
CPAT coding probability 4.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN12-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN12-2:1
3.1 lnc-TSPAN12-3:1
4.0 lnc-TSPAN12-3:1
4.1 lnc-TSPAN12-3:1
5.0 lnc-TSPAN12-3:1
5.1 lnc-TSPAN12-3:1
5.2 lnc-TSPAN12-3:1