Transcript: lnc-TSPAN33-2:1

Basic information

LNCipedia transcript ID: lnc-TSPAN33-2:1 
LNCipedia gene ID: lnc-TSPAN33-2
Location (hg38): chr7:129128499-129196100
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1894 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000514496
Alternative gene names: ENSG00000248549


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.252 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN33-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN33-1:1
3.1 lnc-TSPAN33-2:1
4.0 lnc-TSPAN33-2:1
4.1 lnc-TSPAN33-2:1
5.0 lnc-TSPAN33-2:1
5.1 lnc-TSPAN33-2:1
5.2 lnc-TSPAN33-2:1