Transcript: lnc-TSPAN5-2:2

Basic information

LNCipedia transcript ID: lnc-TSPAN5-2:2 
LNCipedia gene ID: lnc-TSPAN5-2
Ensembl Gene ID: ENSG00000254044
Ensembl Transcript ID: ENST00000521680
Location (hg38): chr4:97334635-97633811
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 500 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521680.1; RP11-681L8.1-002; OTTHUMT00000381038.1; NONHSAT097478; ENST00000521680.5
Alternative gene names: ENSG00000254044.1; RP11-681L8.1; OTTHUMG00000164938.1; ENSG00000254044.5; AC034154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.2159 non-coding 
CPAT coding probability 7.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN5-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPAN5-2:2
4.0 lnc-TSPAN5-2:2
4.1 lnc-TSPAN5-2:2
5.0 lnc-TSPAN5-2:2
5.1 lnc-ADH1B-34:2
5.2 lnc-TSPAN5-2:2