Transcript: lnc-TSPAN8-4:1

Basic information

LNCipedia transcript ID: lnc-TSPAN8-4:1 
LNCipedia gene ID: lnc-TSPAN8-4
Ensembl Gene ID: ENSG00000257454
Ensembl Transcript ID: ENST00000548497
Location (hg38): chr12:71034122-71104526
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548497.1; CTD-2021H9.2-001; OTTHUMT00000404735.1; NONHSAT029428
Alternative gene names: ENSG00000257454.1; CTD-2021H9.2; OTTHUMG00000169540.1; AC025575.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.2083 non-coding 
CPAT coding probability 7.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN8-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2021H9.3.1-1:1
4.0 lnc-CTD-2021H9.3.1-4:1
4.1 lnc-CTD-2021H9.3.1-4:1
5.0 lnc-CTD-2021H9.3.1-4:1
5.1 lnc-LRRC10-16:1
5.2 lnc-TSPAN8-4:1