Transcript: lnc-TSPO-3:2

Basic information

LNCipedia transcript ID: lnc-TSPO-3:2 
LNCipedia gene ID: lnc-TSPO-3
RefSeq ID: NR_134582
Location (hg38): chr22:43275942-43283830
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1964 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134582.1
Alternative gene names: LOC101927447


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.8301 non-coding 
CPAT coding probability 11.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPO-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SMDT1-22:1
5.1 lnc-SMDT1-22:1
5.2 lnc-TSPO-3:2