Transcript: lnc-TSPOAP1-1:4

Basic information

LNCipedia transcript ID: lnc-TSPOAP1-1:4 
LNCipedia gene ID: lnc-TSPOAP1-1
Ensembl Gene ID: ENSG00000265206
Ensembl Transcript ID: ENST00000579003
Location (hg38): chr17:58330884-58332508
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1625 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579003.1; hsa-mir-142.1-001; OTTHUMT00000443998.1; NONHSAT054945
Alternative gene names: ENSG00000265206.1; hsa-mir-142; OTTHUMG00000178925.1; ENSG00000265206.2; MIR142; ENSG00000265206.3; RP5-1171I10.5; ENSG00000265206.4; ENSG00000265206.5; AC004687.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.4433 coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TSPOAP1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BZRAP1-1:1
4.0 lnc-BZRAP1-1:1
4.1 lnc-BZRAP1-1:1
5.0 lnc-BZRAP1-1:1
5.1 lnc-PTRH2-25:4
5.2 lnc-TSPOAP1-1:4