Transcript: lnc-TSPYL6-2:1

Basic information

LNCipedia transcript ID: lnc-TSPYL6-2:1 
LNCipedia gene ID: lnc-TSPYL6-2
Ensembl Gene ID: ENSG00000228108
Ensembl Transcript ID: ENST00000433475
Location (hg38): chr2:54516048-54540697
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 536 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433475.1; AC092839.3-001; OTTHUMT00000326173.1; NONHSAT070738
Alternative gene names: ENSG00000228108.1; AC092839.3; OTTHUMG00000152417.2; AC092839.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.8043 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPYL6-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPYL6-2:1
4.0 lnc-TSPYL6-2:1
4.1 lnc-TSPYL6-2:1
5.0 lnc-TSPYL6-2:1
5.1 lnc-PPP4R3B-29:1
5.2 lnc-TSPYL6-2:1