Transcript: lnc-TSR1-1:1

Basic information

LNCipedia transcript ID: lnc-TSR1-1:1 
LNCipedia gene ID: lnc-TSR1-1
Ensembl Gene ID: ENSG00000236457
Ensembl Transcript ID: ENST00000413674
Location (hg38): chr17:2215482-2216015
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 323 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413674.1; AC130689.5-001; OTTHUMT00000255275.1; NONHSAT144920
Alternative gene names: ENSG00000236457.1; AC130689.5; OTTHUMG00000132217.1; AC090617.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.1646 non-coding 
CPAT coding probability 6.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSR1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSR1-1:1
4.0 lnc-TSR1-1:1
4.1 lnc-TSR1-1:1
5.0 lnc-TSR1-1:1
5.1 lnc-RPH3AL-60:2
5.2 lnc-TSR1-1:1