Transcript: lnc-TSR1-1:2

Basic information

LNCipedia transcript ID: lnc-TSR1-1:2 
LNCipedia gene ID: lnc-TSR1-1
Location (hg38): chr17:2215482-2216020
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 328 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236457.1|ENST00000413674.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -154.1646 non-coding 
CPAT coding probability 3.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSR1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TSR1-1:2
5.0 lnc-TSR1-1:2
5.1 lnc-RPH3AL-60:1
5.2 lnc-TSR1-1:2