Transcript: lnc-TSR3-1:4

Basic information

LNCipedia transcript ID: lnc-TSR3-1:4 
LNCipedia gene ID: lnc-TSR3-1
Ensembl Gene ID: ENSG00000261505
Ensembl Transcript ID: ENST00000568106
Location (hg38): chr16:1319255-1322827
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3107 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568106.1; LA16c-358B7.3-002; OTTHUMT00000432004.1; NONHSAT051942
Alternative gene names: ENSG00000261505.1; LA16c-358B7.3; OTTHUMG00000176428.1; AL031714.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 258.657 coding 
CPAT coding probability 25.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TSR3-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf42-1:3
4.0 lnc-C16orf42-1:3
4.1 lnc-C16orf42-1:3
5.0 lnc-C16orf42-1:3
5.1 lnc-PKMYT1-92:4
5.2 lnc-TSR3-1:4