Transcript: lnc-TSTD2-2:1

Basic information

LNCipedia transcript ID: lnc-TSTD2-2:1 
LNCipedia gene ID: lnc-TSTD2-2
Location (hg38): chr9:97513037-97516338
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 503 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000451595.1; RP11-244N9.6-001; OTTHUMT00000053331.1
Alternative gene names: ENSG00000228174.1; RP11-244N9.6; OTTHUMG00000020329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.846 non-coding 
CPAT coding probability 9.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSTD2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSTD2-2:1
4.0 lnc-TSTD2-2:1
4.1 lnc-TSTD2-2:1
5.0 lnc-TSTD2-2:1
5.1 lnc-FANCC-55:4
5.2 lnc-TSTD2-2:1