Transcript: lnc-TSTD2-2:2

Basic information

LNCipedia transcript ID: lnc-TSTD2-2:2 
LNCipedia gene ID: lnc-TSTD2-2
Ensembl Gene ID: ENSG00000228174
Ensembl Transcript ID: ENST00000609957
Location (hg38): chr9:97513144-97517836
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 681 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609957.1
Alternative gene names: ENSG00000228174.3; RP11-244N9.6; ENSG00000228174.7; AL162385.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.7408 non-coding 
CPAT coding probability 4.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSTD2-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSTD2-2:2
4.0 lnc-TSTD2-2:2
4.1 lnc-TSTD2-2:2
5.0 lnc-TSTD2-2:2
5.1 lnc-FANCC-55:1
5.2 lnc-TSTD2-2:2