Transcript: lnc-TTC14-3:2

Basic information

LNCipedia transcript ID: lnc-TTC14-3:2 
LNCipedia gene ID: lnc-TTC14-3
Location (hg38): chr3:180868761-180870782
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 791 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005442; NONHSAT093449
Alternative gene names: XLOC_002938; linc-FXR1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 67.672 coding 
CPAT coding probability 12.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TTC14-3:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC14-2:2
3.1 lnc-TTC14-3:2
4.0 lnc-TTC14-3:2
4.1 lnc-TTC14-3:2
5.0 lnc-TTC14-3:2
5.1 lnc-SOX2-15:2
5.2 lnc-TTC14-3:2