Transcript: lnc-TTC24-1:5

Basic information

LNCipedia transcript ID: lnc-TTC24-1:5 
LNCipedia gene ID: lnc-TTC24-1
Ensembl Gene ID: ENSG00000260460
Ensembl Transcript ID: ENST00000564032
Location (hg38): chr1:156509854-156511681
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1828 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564032.1; RP11-284F21.8-001; OTTHUMT00000431510.1
Alternative gene names: ENSG00000260460.1; RP11-284F21.8; OTTHUMG00000176105.1; AL365181.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.7543 non-coding 
CPAT coding probability 7.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC24-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC24-2:1
4.0 lnc-TTC24-2:1
4.1 lnc-TTC24-1:5
5.0 lnc-TTC24-1:5
5.1 lnc-PMF1-BGLAP-7:3
5.2 lnc-TTC24-1:5