Transcript: lnc-TTC3-5:2

Basic information

LNCipedia transcript ID: lnc-TTC3-5:2 
LNCipedia gene ID: lnc-TTC3-5
Ensembl Gene ID: ENSG00000272948
Ensembl Transcript ID: ENST00000608405
Location (hg38): chr21:37267784-37268497
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 714 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608405.2
Alternative gene names: ENSG00000272948.2; AP001412.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -256.0033 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC3-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TTC3-5:2
4.1 lnc-TTC3-5:2
5.0 lnc-TTC3-5:2
5.1 lnc-SIM2-22:4
5.2 lnc-TTC3-5:2