Transcript: lnc-TTC30B-1:4

Basic information

LNCipedia transcript ID: lnc-TTC30B-1:4 
LNCipedia gene ID: lnc-TTC30B-1
Ensembl Gene ID: ENSG00000213963
Ensembl Transcript ID: ENST00000430416
Location (hg38): chr2:177283514-177323164
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 889 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430416.1; AC074286.1-004; OTTHUMT00000257750.1; NONHSAT075712; ENST00000430416.5
Alternative gene names: ENSG00000213963.2; AC074286.1; OTTHUMG00000132531.2; ENSG00000213963.6; AC019080.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.724 non-coding 
CPAT coding probability 12.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC30B-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC30B-1:4
4.0 lnc-TTC30B-1:4
4.1 lnc-TTC30B-1:4
5.0 lnc-TTC30B-1:4
5.1 lnc-SESTD1-24:16
5.2 lnc-TTC30B-1:4