Transcript: lnc-TTC34-2:1

Basic information

LNCipedia transcript ID: lnc-TTC34-2:1 
LNCipedia gene ID: lnc-TTC34-2
Ensembl Gene ID: ENSG00000231630
Ensembl Transcript ID: ENST00000429389
Location (hg38): chr1:2814432-2814998
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000458; ENST00000429389; ENST00000429389.1; RP11-740P5.3-001; OTTHUMT00000001338.1; NONHSAT000489
Alternative gene names: XLOC_000681; linc-MMEL1-2; ENSG00000231630; RP11-740P5.3; ENSG00000231630.1; OTTHUMG00000000565.1; AL592464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 56.5775 non-coding 
CPAT coding probability 6.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TTC34-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC34-2:1
3.1 lnc-TTC34-2:1
4.0 lnc-TTC34-2:1
4.1 lnc-TTC34-2:1
5.0 lnc-TTC34-2:1
5.1 lnc-CLSTN1-91:1
5.2 lnc-TTC34-2:1