Transcript: lnc-TTC5-2:1

Basic information

LNCipedia transcript ID: lnc-TTC5-2:1 
LNCipedia gene ID: lnc-TTC5-2
Ensembl Gene ID: ENSG00000258768
Ensembl Transcript ID: ENST00000556738
Location (hg38): chr14:20260480-20264308
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3829 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556738.1; CTD-2292M16.8-001; OTTHUMT00000443563.1; NONHSAT035557
Alternative gene names: ENSG00000258768.2; CTD-2292M16.8; OTTHUMG00000178843.1; AL356019.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0858 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC5-2:1
4.0 lnc-TTC5-2:1
4.1 lnc-TTC5-2:1
5.0 lnc-TTC5-2:1
5.1 lnc-TEP1-10:2
5.2 lnc-TTC5-2:1