Transcript: lnc-TTC8-4:1

Basic information

LNCipedia transcript ID: lnc-TTC8-4:1 
LNCipedia gene ID: lnc-TTC8-4
Ensembl Gene ID: ENSG00000258752
Ensembl Transcript ID: ENST00000555407
Location (hg38): chr14:89350285-89353793
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 601 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555407.1; RP11-356K23.1-001; OTTHUMT00000411013.1; NONHSAT039181
Alternative gene names: ENSG00000258752.1; RP11-356K23.1; OTTHUMG00000170970.1; AL357093.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.5243 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC8-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-33N16.1.1-3:1
4.0 lnc-RP11-33N16.1.1-3:1
4.1 lnc-RP11-33N16.1.1-3:1
5.0 lnc-RP11-33N16.1.1-3:1
5.1 lnc-SPATA7-13:1
5.2 lnc-TTC8-4:1