Transcript: lnc-TTC8-4:5

Basic information

LNCipedia transcript ID: lnc-TTC8-4:5 
LNCipedia gene ID: lnc-TTC8-4
Ensembl Gene ID: ENSG00000258752
Ensembl Transcript ID: ENST00000556942
Location (hg38): chr14:89350302-89364699
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 498 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556942.1; RP11-356K23.1-002; OTTHUMT00000411014.1; NONHSAT039182
Alternative gene names: ENSG00000258752.1; RP11-356K23.1; OTTHUMG00000170970.1; AL357093.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.6848 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTC8-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-33N16.1.1-3:2
4.0 lnc-RP11-33N16.1.1-3:2
4.1 lnc-RP11-33N16.1.1-3:2
5.0 lnc-RP11-33N16.1.1-3:2
5.1 lnc-SPATA7-13:5
5.2 lnc-TTC8-4:5