Transcript: lnc-TTLL7-6:1

Basic information

LNCipedia transcript ID: lnc-TTLL7-6:1 
LNCipedia gene ID: lnc-TTLL7-6
Ensembl Gene ID: ENSG00000233290
Ensembl Transcript ID: ENST00000420549
Location (hg38): chr1:82215220-82261133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 671 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000554; ENST00000420549; ENST00000420549.1; RP11-147G16.1-001; OTTHUMT00000027201.1; NONHSAT004140
Alternative gene names: XLOC_000884; linc-ELTD1-10; ENSG00000233290; RP11-147G16.1; ENSG00000233290.1; OTTHUMG00000009845.1; AC093580.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0894 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TTLL7-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTLL7-6:1
3.1 lnc-TTLL7-6:1
4.0 lnc-TTLL7-6:1
4.1 lnc-TTLL7-6:1
5.0 lnc-TTLL7-6:1
5.1 lnc-FUBP1-46:1
5.2 lnc-TTLL7-6:1