Transcript: lnc-TUBB8-1:1

Basic information

LNCipedia transcript ID: lnc-TUBB8-1:1 
LNCipedia gene ID: lnc-TUBB8-1
Ensembl Gene ID: ENSG00000260370
Ensembl Transcript ID: ENST00000562162
Location (hg38): chr10:14061-14604
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017894; ENST00000449585; ENST00000449585.1; RP11-631M21.1-001; OTTHUMT00000046373.1; NONHSAT010849; ENST00000562162.1
Alternative gene names: XLOC_008681; linc-FRG2B; ENSG00000224285; RP11-631M21.1; ENSG00000224285.1; OTTHUMG00000017523.1; ENSG00000260370.1; AC215217.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.2868 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBB8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBB8-1:1
3.1 lnc-TUBB8-1:1
4.0 lnc-TUBB8-1:1
4.1 lnc-TUBB8-1:1
5.0 lnc-TUBB8-1:1
5.1 lnc-KLF6-113:2
5.2 lnc-TUBB8-1:1