Transcript: lnc-TUBGCP6-5:9

Basic information

LNCipedia transcript ID: lnc-TUBGCP6-5:9 
LNCipedia gene ID: lnc-TUBGCP6-5
Ensembl Gene ID: ENSG00000273188
Ensembl Transcript ID: ENST00000607943
Location (hg38): chr22:50191724-50192402
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 679 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607943.1
Alternative gene names: ENSG00000273188.1; RP3-402G11.25; AL022328.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.6645 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBGCP6-5:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TUBGCP6-6:1
4.0 lnc-TUBGCP6-6:1
4.1 lnc-TUBGCP6-5:9
5.0 lnc-TUBGCP6-5:9
5.1 lnc-HDAC10-5:9
5.2 lnc-TUBGCP6-5:9