Transcript: lnc-TUFM-3:3

Basic information

LNCipedia transcript ID: lnc-TUFM-3:3 
LNCipedia gene ID: lnc-TUFM-3
Ensembl Gene ID: ENSG00000275807
Ensembl Transcript ID: ENST00000614819
Location (hg38): chr16:28822431-28823969
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1539 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614819.1
Alternative gene names: ENSG00000275807.1; RP11-1348G14.8; AC145285.7; AC145285.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 196.4825 coding 
CPAT coding probability 29.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TUFM-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TUFM-3:3
4.1 lnc-TUFM-3:3
5.0 lnc-TUFM-3:3
5.1 lnc-SULT1A2-9:1
5.2 lnc-TUFM-3:3