Transcript: lnc-TUNAR-1:2

Basic information

LNCipedia transcript ID: lnc-TUNAR-1:2 
LNCipedia gene ID: lnc-TUNAR-1
Location (hg38): chr14:95876258-95898568
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 22278 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250366.2|ENCT00000129503.1
Alternative gene names: TUNA; HI-LNC78


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.1516 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUNAR-1:2 no no no no

Available literature

  1. Li (2017), Long noncoding RNA linc00617 exhibits oncogenic activity in breast cancer., Mol. Carcinog.
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TUNAR:5
5.0 TUNAR:5
5.1 lnc-GLRX5-12:2
5.2 lnc-TUNAR-1:2