Transcript: lnc-TVP23A-1:1

Basic information

LNCipedia transcript ID: lnc-TVP23A-1:1 
LNCipedia gene ID: lnc-TVP23A-1
Location (hg38): chr16:10938886-10940044
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1159 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000570440.1; RP11-876N24.5-001; OTTHUMT00000436700.1
Alternative gene names: ENSG00000263013.1; RP11-876N24.5; OTTHUMG00000177394.1; AC133065.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.3888 non-coding 
CPAT coding probability 7.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TVP23A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM18A-1:1
4.0 lnc-FAM18A-1:1
4.1 lnc-FAM18A-1:1
5.0 lnc-FAM18A-1:1
5.1 lnc-PARN-62:1
5.2 lnc-TVP23A-1:1