Transcript: lnc-TWIST2-14:3

Basic information

LNCipedia transcript ID: lnc-TWIST2-14:3 
LNCipedia gene ID: lnc-TWIST2-14
Ensembl Gene ID: ENSG00000222020
Ensembl Transcript ID: ENST00000428471
RefSeq ID: NR_135577
Location (hg38): chr2:239401748-239402355
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000428471.1; NR_135577.1
Alternative gene names: ENSG00000222020.2; AC062017.1; LOC101928111


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -359.5885 non-coding 
CPAT coding probability 9.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TWIST2-14:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC062017.1.1-4:2
4.1 lnc-AC062017.1.1-4:2
5.0 lnc-AC062017.1.1-4:2
5.1 lnc-TRAF3IP1-14:3
5.2 lnc-TWIST2-14:3