Transcript: lnc-TWIST2-5:1

Basic information

LNCipedia transcript ID: lnc-TWIST2-5:1 
LNCipedia gene ID: lnc-TWIST2-5
Ensembl Gene ID: ENSG00000196758
Ensembl Transcript ID: ENST00000358775
Location (hg38): chr2:239578301-239586094
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3700 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000358775.1
Alternative gene names: ENSG00000196758.3; AC079612.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.4053 non-coding 
CPAT coding probability 71.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TWIST2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC079612.1.1-2:1
4.1 lnc-AC079612.1.1-2:1
5.0 lnc-AC079612.1.1-2:1
5.1 lnc-TRAF3IP1-15:1
5.2 lnc-TWIST2-5:1