Transcript: lnc-TWIST2-6:1

Basic information

LNCipedia transcript ID: lnc-TWIST2-6:1 
LNCipedia gene ID: lnc-TWIST2-6
Ensembl Gene ID: ENSG00000227459
Ensembl Transcript ID: ENST00000446029
Location (hg38): chr2:239625698-239630839
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003134; ENST00000446029; ENST00000446029.1; AC079612.2-001; OTTHUMT00000326162.1; NONHSAT077803
Alternative gene names: XLOC_001919; linc-GPC1-1; ENSG00000227459; AC079612.2; ENSG00000227459.1; OTTHUMG00000152416.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -341.859 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TWIST2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC079612.1.1-1:1
3.1 lnc-AC079612.1.1-1:1
4.0 lnc-AC079612.1.1-1:1
4.1 lnc-AC079612.1.1-1:1
5.0 lnc-AC079612.1.1-1:1
5.1 lnc-TRAF3IP1-16:1
5.2 lnc-TWIST2-6:1