Transcript: lnc-TXLNB-3:17

Basic information

LNCipedia transcript ID: lnc-TXLNB-3:17 
LNCipedia gene ID: lnc-TXLNB-3
Ensembl Gene ID: ENSG00000272446
Ensembl Transcript ID: ENST00000616537
Location (hg38): chr6:139239086-139277181
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1188 bp
Exons: 9
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616537.4
Alternative gene names: ENSG00000272446.5; RP1-225E12.3; AL158850.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3645.8577 coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TXLNB-3:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TXLNB-3:17
4.1 lnc-TXLNB-3:17
5.0 lnc-TXLNB-3:17
5.1 lnc-OLIG3-41:1
5.2 lnc-TXLNB-3:17