Transcript: lnc-TXLNB-3:3

Basic information

LNCipedia transcript ID: lnc-TXLNB-3:3 
LNCipedia gene ID: lnc-TXLNB-3
Ensembl Gene ID: ENSG00000231329
Ensembl Transcript ID: ENST00000592557
Location (hg38): chr6:139199882-139239305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT115244; ENST00000592557.1; ENST00000592557.5
Alternative gene names: ENSG00000231329.3; RP1-225E12.2; ENSG00000231329.7; AL031772.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.6475 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TXLNB-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TXLNB-3:3
4.0 lnc-TXLNB-3:3
4.1 lnc-TXLNB-3:3
5.0 lnc-TXLNB-3:3
5.1 lnc-OLIG3-41:20
5.2 lnc-TXLNB-3:3