Transcript: lnc-TXLNB-3:6

Basic information

LNCipedia transcript ID: lnc-TXLNB-3:6 
LNCipedia gene ID: lnc-TXLNB-3
Ensembl Gene ID: ENSG00000231329
Ensembl Transcript ID: ENST00000585447
Location (hg38): chr6:139170057-139239305
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 728 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT115240; ENST00000585447.1; ENST00000585447.5
Alternative gene names: ENSG00000231329.3; RP1-225E12.2; ENSG00000231329.7; AL031772.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.5225 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TXLNB-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TXLNB-3:6
4.0 lnc-TXLNB-3:6
4.1 lnc-TXLNB-3:6
5.0 lnc-TXLNB-3:6
5.1 lnc-OLIG3-41:17
5.2 lnc-TXLNB-3:6