Transcript: lnc-TXN2-1:2

Basic information

LNCipedia transcript ID: lnc-TXN2-1:2 
LNCipedia gene ID: lnc-TXN2-1
Ensembl Gene ID: ENSG00000228719
Ensembl Transcript ID: ENST00000442579
Location (hg38): chr22:36445395-36454944
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029480; ENST00000442579; ENST00000442579.1; RP5-1119A7.14-001; OTTHUMT00000319022.1
Alternative gene names: XLOC_014364; linc-MYH9; ENSG00000228719; RP5-1119A7.14; ENSG00000228719.1; OTTHUMG00000150597.1; AL022313.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.703 non-coding 
CPAT coding probability 8.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TXN2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TXN2-1:2
3.1 lnc-TXN2-1:2
4.0 lnc-TXN2-1:2
4.1 lnc-TXN2-1:2
5.0 lnc-TXN2-1:2
5.1 lnc-MYH9-2:2
5.2 lnc-TXN2-1:2