Transcript: lnc-TXNL1-4:1

Basic information

LNCipedia transcript ID: lnc-TXNL1-4:1 
LNCipedia gene ID: lnc-TXNL1-4
Ensembl Gene ID: ENSG00000267146
Ensembl Transcript ID: ENST00000586391
Location (hg38): chr18:56872668-56873970
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 581 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059428; ENST00000586391.1
Alternative gene names: ENSG00000267146.1; RP11-383D22.1; AC012301.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.5508 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TXNL1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TXNL1-4:1
4.0 lnc-TXNL1-4:1
4.1 lnc-TXNL1-4:1
5.0 lnc-TXNL1-4:1
5.1 lnc-MBD2-24:1
5.2 lnc-TXNL1-4:1