Transcript: lnc-U2SURP-3:5

Basic information

LNCipedia transcript ID: lnc-U2SURP-3:5 
LNCipedia gene ID: lnc-U2SURP-3
Location (hg38): chr3:142937447-142941457
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 502 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005598; NONHSAT092501
Alternative gene names: XLOC_002845; linc-SR140-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.1048 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-U2SURP-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-U2SURP-2:5
3.1 lnc-U2SURP-3:5
4.0 lnc-U2SURP-3:5
4.1 lnc-U2SURP-3:5
5.0 lnc-U2SURP-3:5
5.1 lnc-PXYLP1-24:13
5.2 lnc-U2SURP-3:5