Transcript: lnc-UAP1L1-2:1

Basic information

LNCipedia transcript ID: lnc-UAP1L1-2:1 
LNCipedia gene ID: lnc-UAP1L1-2
Location (hg38): chr9:137057663-137062461
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 301 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435463.1; RP11-229P13.22-001; OTTHUMT00000055264.1; NONHSAT135664
Alternative gene names: ENSG00000229257.1; RP11-229P13.22; OTTHUMG00000020974.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8575 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UAP1L1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UAP1L1-2:1
4.0 lnc-UAP1L1-2:1
4.1 lnc-UAP1L1-2:1
5.0 lnc-UAP1L1-2:1
5.1 lnc-GPSM1-41:3
5.2 lnc-UAP1L1-2:1