Transcript: lnc-UAP1L1-2:4

Basic information

LNCipedia transcript ID: lnc-UAP1L1-2:4 
LNCipedia gene ID: lnc-UAP1L1-2
Ensembl Gene ID: ENSG00000229257
Ensembl Transcript ID: ENST00000435463
Location (hg38): chr9:137057663-137062461
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 301 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT135665; ENST00000435463.2
Alternative gene names: ENSG00000229257.2; RP11-229P13.22; AL807752.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8575 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UAP1L1-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UAP1L1-2:4
4.0 lnc-UAP1L1-2:4
4.1 lnc-UAP1L1-2:4
5.0 lnc-UAP1L1-2:4
5.1 lnc-GPSM1-41:4
5.2 lnc-UAP1L1-2:4