Transcript: lnc-UBASH3A-1:5

Basic information

LNCipedia transcript ID: lnc-UBASH3A-1:5 
LNCipedia gene ID: lnc-UBASH3A-1
Ensembl Gene ID: ENSG00000239930
Ensembl Transcript ID: ENST00000416179
RefSeq ID: NR_135518
Location (hg38): chr21:42496539-42497443
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 449 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000416179.1; AP001625.4-002; OTTHUMT00000195397.1; NONHSAT082331; NR_135518.1
Alternative gene names: ENSG00000239930.1; AP001625.4; OTTHUMG00000086811.1; ENSG00000239930.2; AP001625.3; LOC101930094


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.4772 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBASH3A-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBASH3A-1:2
4.0 lnc-SLC37A1-1:3
4.1 lnc-SLC37A1-1:3
5.0 lnc-SLC37A1-1:3
5.1 lnc-PDE9A-9:3
5.2 lnc-UBASH3A-1:5