Transcript: lnc-UBC-1:1

Basic information

LNCipedia transcript ID: lnc-UBC-1:1 
LNCipedia gene ID: lnc-UBC-1
Location (hg38): chr12:124858583-124878003
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1792 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000501570; ENST00000501570.2; RP11-592O2.1-001; OTTHUMT00000400176.1; NONHSAT031684
Alternative gene names: ENSG00000246139; RP11-592O2.1; ENSG00000246139.2; OTTHUMG00000168545.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0231 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBC-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBC-1:1
3.1 lnc-UBC-1:1
4.0 lnc-UBC-1:1
4.1 lnc-UBC-1:1
5.0 lnc-UBC-1:1
5.1 lnc-DHX37-29:1
5.2 lnc-UBC-1:1