Transcript: lnc-UBE2N-1:6

Basic information

LNCipedia transcript ID: lnc-UBE2N-1:6 
LNCipedia gene ID: lnc-UBE2N-1
Ensembl Gene ID: ENSG00000257322
Ensembl Transcript ID: ENST00000549930
Location (hg38): chr12:93003758-93215679
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 249 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549930.1; RP11-511B23.2-002; OTTHUMT00000407312.1; NONHSAT140086
Alternative gene names: ENSG00000257322.1; RP11-511B23.2; OTTHUMG00000170112.1; ENSG00000257322.5; AC138123.2; AC138123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.7504 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBE2N-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EEA1-1:1
4.0 lnc-UBE2N-1:6
4.1 lnc-UBE2N-1:6
5.0 lnc-UBE2N-1:6
5.1 lnc-EEA1-1:14
5.2 lnc-UBE2N-1:6