Transcript: lnc-UBXN4-1:3

Basic information

LNCipedia transcript ID: lnc-UBXN4-1:3 
LNCipedia gene ID: lnc-UBXN4-1
Location (hg38): chr2:135820256-135825581
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 665 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226806.1|ENCT00000230049.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -201.996 non-coding 
CPAT coding probability 34.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBXN4-1:3 yes no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-UBXN4-1:3
5.0 lnc-UBXN4-1:3
5.1 lnc-GPR17-108:4
5.2 lnc-UBXN4-1:3