Transcript: lnc-UCHL3-5:14

Basic information

LNCipedia transcript ID: lnc-UCHL3-5:14 
LNCipedia gene ID: lnc-UCHL3-5
Ensembl Gene ID: ENSG00000281167
Ensembl Transcript ID: ENST00000446691
Location (hg38): chr13:74434538-74555515
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 880 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446691.6
Alternative gene names: ENSG00000281167.1; RP11-285E18.2; AL355390.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -51.024 non-coding 
CPAT coding probability 5.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCHL3-5:14 no no no no

Available literature

  1. Parolo (2015), Characterization of the biological processes shaping the genetic structure of the Italian population., BMC Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-UCHL3-5:14
4.1 lnc-UCHL3-5:14
5.0 lnc-UCHL3-5:14
5.1 lnc-COL4A2-250:2
5.2 lnc-UCHL3-5:14