Transcript: lnc-UCK2-1:1

Basic information

LNCipedia transcript ID: lnc-UCK2-1:1 
LNCipedia gene ID: lnc-UCK2-1
Ensembl Gene ID: ENSG00000224358
Ensembl Transcript ID: ENST00000423121
Location (hg38): chr1:165768929-165775176
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2150 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423121; ENST00000423121.1; RP11-466F5.8-001; OTTHUMT00000083935.1; NONHSAT007335
Alternative gene names: ENSG00000224358; RP11-466F5.8; ENSG00000224358.1; OTTHUMG00000034703.1; AL451074.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.9903 non-coding 
CPAT coding probability 5.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCK2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UCK2-1:1
3.1 lnc-UCK2-1:1
4.0 lnc-UCK2-1:1
4.1 lnc-UCK2-1:1
5.0 lnc-UCK2-1:1
5.1 lnc-MAEL-26:1
5.2 lnc-UCK2-1:1