Transcript: lnc-UCK2-3:1

Basic information

LNCipedia transcript ID: lnc-UCK2-3:1 
LNCipedia gene ID: lnc-UCK2-3
Ensembl Gene ID: ENSG00000229588
Ensembl Transcript ID: ENST00000425271
Location (hg38): chr1:166334884-166335762
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 423 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000328; ENST00000425271; ENST00000425271.1; RP11-479J7.2-001; OTTHUMT00000096761.1; NONHSAT007357
Alternative gene names: XLOC_000451; linc-POGK-1; ENSG00000229588; RP11-479J7.2; ENSG00000229588.1; OTTHUMG00000034556.2; AL390115.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.4507 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCK2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UCK2-2:1
3.1 lnc-UCK2-3:1
4.0 lnc-UCK2-3:1
4.1 lnc-UCK2-3:1
5.0 lnc-UCK2-3:1
5.1 lnc-MAEL-3:3
5.2 lnc-UCK2-3:1