Transcript: lnc-UNC13D-2:1

Basic information

LNCipedia transcript ID: lnc-UNC13D-2:1 
LNCipedia gene ID: lnc-UNC13D-2
Ensembl Gene ID: ENSG00000266980
Ensembl Transcript ID: ENST00000586808
Location (hg38): chr17:75818815-75820055
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 890 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT055949; ENST00000586808.1
Alternative gene names: ENSG00000266980.1; RP11-552F3.4; AC087289.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 41.8429 non-coding 
CPAT coding probability 3.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UNC13D-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC087289.1-1:1
4.0 lnc-AC087289.1-1:1
4.1 lnc-AC087289.1-1:1
5.0 lnc-AC087289.1-1:1
5.1 lnc-CASKIN2-14:1
5.2 lnc-UNC13D-2:1