Transcript: lnc-UPF2-3:1

Basic information

LNCipedia transcript ID: lnc-UPF2-3:1 
LNCipedia gene ID: lnc-UPF2-3
Location (hg38): chr10:11889619-11934706
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3141 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001iky_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.7054 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UPF2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UPF2-3:1
4.0 lnc-UPF2-3:1
4.1 lnc-UPF2-3:1
5.0 lnc-UPF2-3:1
5.1 lnc-KLF6-142:1
5.2 lnc-UPF2-3:1