Transcript: lnc-UPK1B-1:1

Basic information

LNCipedia transcript ID: lnc-UPK1B-1:1 
LNCipedia gene ID: lnc-UPK1B-1
Location (hg38): chr3:119202586-119211887
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 882 bp
Exons: 7
Sources: Nielsen et al.,2014
Alternative transcript names: l_2443_chr3:118921432-118925867_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.2729 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UPK1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UPK1B-1:1
4.0 lnc-UPK1B-1:1
4.1 lnc-UPK1B-1:1
5.0 lnc-UPK1B-1:1
5.1 lnc-TIMMDC1-11:1
5.2 lnc-UPK1B-1:1